STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105925219Uncharacterized protein. (314 aa)    
Predicted Functional Partners:
LOC105922669
RAD54 like.
     
 0.453
rad54b
RAD54 homolog B.
     
 0.453
MPHOSPH9
M-phase phosphoprotein 9.
     
 0.453
ENSFHEP00000029560
Uncharacterized protein.
     
 0.453
LOC105935908
Si:ch211-13f8.1.
  
     0.427
blzf1
Basic leucine zipper nuclear factor 1.
      
 0.422
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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