LOC105928564 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105928564

Acid-sensing (proton-gated) ion channel 1a; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. (485 aa)

Predicted Functional Partners:

stoml1

0.703

HECW1

0.626

ENSFHEP00000008388

0.626

ENSFHEP00000008781

0.626

LOC105923572

0.626

hecw2

0.626

NEDD4

0.626

ENSFHEP00000008750

0.604

gak

0.561

LOC105925884

0.503

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000008388	ENSFHEP00000008750	ENSFHEP00000008388	ENSFHEP00000008750	HECT domain-containing protein.	C2 domain-containing protein.	0.900
ENSFHEP00000008388	HECW1	ENSFHEP00000008388	ENSFHEP00000008331	HECT domain-containing protein.	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1.	0.899
ENSFHEP00000008388	LOC105925884	ENSFHEP00000008388	ENSFHEP00000008476	HECT domain-containing protein.	E3 ubiquitin-protein ligase.	0.546
ENSFHEP00000008388	LOC105928564	ENSFHEP00000008388	ENSFHEP00000013435	HECT domain-containing protein.	Acid-sensing (proton-gated) ion channel 1a; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.626
ENSFHEP00000008388	gak	ENSFHEP00000008388	ENSFHEP00000023046	HECT domain-containing protein.	Cyclin G associated kinase.	0.426
ENSFHEP00000008750	ENSFHEP00000008388	ENSFHEP00000008750	ENSFHEP00000008388	C2 domain-containing protein.	HECT domain-containing protein.	0.900
ENSFHEP00000008750	ENSFHEP00000008781	ENSFHEP00000008750	ENSFHEP00000008781	C2 domain-containing protein.	HECT domain-containing protein.	0.899
ENSFHEP00000008750	LOC105923572	ENSFHEP00000008750	ENSFHEP00000017850	C2 domain-containing protein.	NEDD4 like E3 ubiquitin protein ligase.	0.828
ENSFHEP00000008750	LOC105925884	ENSFHEP00000008750	ENSFHEP00000008476	C2 domain-containing protein.	E3 ubiquitin-protein ligase.	0.770
ENSFHEP00000008750	LOC105928564	ENSFHEP00000008750	ENSFHEP00000013435	C2 domain-containing protein.	Acid-sensing (proton-gated) ion channel 1a; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.604
ENSFHEP00000008750	NEDD4	ENSFHEP00000008750	ENSFHEP00000032344	C2 domain-containing protein.	NEDD4 E3 ubiquitin protein ligase.	0.575
ENSFHEP00000008750	gak	ENSFHEP00000008750	ENSFHEP00000023046	C2 domain-containing protein.	Cyclin G associated kinase.	0.426
ENSFHEP00000008781	ENSFHEP00000008750	ENSFHEP00000008781	ENSFHEP00000008750	HECT domain-containing protein.	C2 domain-containing protein.	0.899
ENSFHEP00000008781	HECW1	ENSFHEP00000008781	ENSFHEP00000008331	HECT domain-containing protein.	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1.	0.919
ENSFHEP00000008781	LOC105925884	ENSFHEP00000008781	ENSFHEP00000008476	HECT domain-containing protein.	E3 ubiquitin-protein ligase.	0.546
ENSFHEP00000008781	LOC105928564	ENSFHEP00000008781	ENSFHEP00000013435	HECT domain-containing protein.	Acid-sensing (proton-gated) ion channel 1a; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.626
ENSFHEP00000008781	gak	ENSFHEP00000008781	ENSFHEP00000023046	HECT domain-containing protein.	Cyclin G associated kinase.	0.426
HECW1	ENSFHEP00000008388	ENSFHEP00000008331	ENSFHEP00000008388	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1.	HECT domain-containing protein.	0.899
HECW1	ENSFHEP00000008781	ENSFHEP00000008331	ENSFHEP00000008781	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1.	HECT domain-containing protein.	0.919
HECW1	LOC105925884	ENSFHEP00000008331	ENSFHEP00000008476	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1.	E3 ubiquitin-protein ligase.	0.546