STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
map1lc3cMicrotubule-associated protein 1 light chain 3 gamma. (128 aa)    
Predicted Functional Partners:
nbr1
NBR1 autophagy cargo receptor a.
   
 0.999
calcoco2
Calcium binding and coiled-coil domain 2.
    
 
 0.971
atg3
Autophagy-related protein 3.
   
 0.946
atg7
Ubiquitin modifier-activating enzyme ATG7-like protein.
   
 0.940
sqstm1
Sequestosome 1.
   
 0.915
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
  
  
 
0.902
atg4b
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
   
 0.902
plekhm1
Pleckstrin homology domain containing, family M (with RUN domain) member 1.
    
 
 0.902
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.895
ENSFHEP00000007556
GSAP-16 domain-containing protein.
   
 0.852
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.