STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popdc2Popeye domain-containing protein 2. (376 aa)    
Predicted Functional Partners:
LOC105938527
Tight junction protein 1b; Belongs to the MAGUK family.
     
 0.529
LOC105916256
Tight junction protein 1a; Belongs to the MAGUK family.
     
 0.529
LOC105932453
Tight junction protein 3; Belongs to the MAGUK family.
     
 0.529
tjp2
Tight junction protein 2a (zona occludens 2); Belongs to the MAGUK family.
     
 0.529
ENSFHEP00000024261
Troponin T type 2a (cardiac).
   
  
 0.522
LOC105930278
Mohawk homeobox b.
      
 0.518
LOC105935504
RING finger protein 11.
      
 0.516
rnf11
Ring finger protein 11b.
      
 0.516
hao1
Hydroxyacid oxidase (glycolate oxidase) 1.
      
 0.516
LOC105935925
Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
      
 0.516
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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