STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105938834Zinc finger protein 408. (774 aa)    
Predicted Functional Partners:
gpatch3
G patch domain-containing protein 3.
   
    0.999
LOC105931131
Zgc:171965; Belongs to the G-protein coupled receptor 1 family.
    
  0.730
f2rl3
F2R like thrombin or trypsin receptor 3; Belongs to the G-protein coupled receptor 1 family.
    
  0.730
serpind1
Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.
    
  0.727
fgb
Fibrinogen beta chain.
   
 
  0.722
ENSFHEP00000007629
RWD domain-containing protein.
   
    0.704
ENSFHEP00000012152
GHMP_kinases_C domain-containing protein.
   
 
 0.690
ENSFHEP00000009001
Uncharacterized protein.
    
  0.659
LOC105923196
Uncharacterized protein.
    
  0.659
samd11
Sterile alpha motif domain containing 11.
    
 
 0.652
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.