STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (830 aa)    
Predicted Functional Partners:
LOC105930485
Epithelial splicing regulatory protein 2.
      
 0.614
rnf181
Ring finger protein 181.
      
 0.603
lin28a
Lin-28 homolog A.
   
 
 0.517
eomes
Eomesodermin homolog b.
      
 0.512
LOC105925165
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.512
rps27a
Ribosomal protein S27a.
    
  0.498
bbox1
Butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1.
      
 0.491
LOC105929483
Lin-28 homolog B (C. elegans).
   
 
 0.453
LOC105929153
Teneurin transmembrane protein 1.
      
 0.424
LOC105921197
Uncharacterized protein.
    
  0.408
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.