STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105926394Family with sequence similarity 8 member A1b. (337 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.673
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.614
amfr
Autocrine motility factor receptor b.
    
 
 0.614
ENSFHEP00000016798
RING-type domain-containing protein.
    
 
 0.475
ENSFHEP00000031571
RING-type domain-containing protein.
    
 
 0.475
LOC105939567
RING finger protein 145.
    
 
 0.463
rnf145
Ring finger protein 145b.
    
 
 0.463
rnf139
Ring finger protein 139.
    
 
 0.452
LOC105939264
Si:dkey-24p1.6.
    
 
 0.439
tmub1
Transmembrane and ubiquitin-like domain containing 1.
      
 0.434
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.