STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSFHEP00000015616Uncharacterized protein. (72 aa)    
Predicted Functional Partners:
ENSFHEP00000020981
TROVE domain-containing protein.
    
  0.519
LOC105938255
Complement C1q C chain.
    
  0.461
lig1
DNA ligase.
    
 0.440
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.425
trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
  0.425
LOC105924034
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.421
supt3h
Uncharacterized protein.
    
  0.418
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
  0.408
LOC105915258
Ig-like domain-containing protein.
    
   0.403
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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