STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105917488Transcription termination factor Rho domain-containing protein. (612 aa)    
Predicted Functional Partners:
LOC105915258
Ig-like domain-containing protein.
   
  0.585
rhbdl3
Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.
    
  0.519
wdr18
WD repeat domain 18.
   
 0.515
LOC105936689
Uncharacterized protein.
  
 
  0.481
tex10
Testis-expressed sequence 10 protein.
    
 0.471
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.462
ripk4
Receptor-interacting serine-threonine kinase 4.
    
  0.441
LOC105918635
Uncharacterized protein.
  
 
  0.432
RPL30
Ribosomal protein L30.
    
  0.428
ENSFHEP00000001312
Ig-like domain-containing protein.
    
  0.421
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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