STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSFHEP00000016045Atonal bHLH transcription factor 1c. (197 aa)    
Predicted Functional Partners:
ENSFHEP00000009623
BHLH domain-containing protein.
    
 
 0.553
tcf12
Transcription factor 12.
    
 
 0.553
LOC105934577
Transcription factor 3a.
    
 
 0.553
TCF4
Transcription factor 4.
    
 
 0.553
tcf3
Transcription factor 3b.
    
 
 0.553
LOC105930310
Cerebellin 12.
      
 0.447
LOC105915897
Bromodomain and WD repeat domain containing 1.
  
     0.415
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 
 0.402
ENSFHEP00000026861
Achaete-scute family bHLH transcription factor 1b.
   
 
 0.402
LOC105928923
Homeobox domain-containing protein.
  
 
 
 0.401
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.