STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssx2ipSynovial sarcoma, X breakpoint 2 interacting protein a. (587 aa)    
Predicted Functional Partners:
LOC105921724
Synovial sarcoma, X breakpoint 2 interacting protein b.
  
  
 
0.954
LOC105932915
Actinin, alpha 1.
     
 0.953
actn4
Uncharacterized protein.
     
 0.953
afdn
Afadin, adherens junction formation factor a.
    
  0.943
actn3
Actinin alpha 3b.
     
 0.678
LOC105927303
Actinin, alpha 2b.
     
 0.678
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.666
alkbh7
AlkB homolog 7.
 
   
  0.599
LOC105928653
Vitellogenin 3, phosvitinless.
 
    
 0.513
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.478
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.