STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105916881Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)    
Predicted Functional Partners:
aifm1
Apoptosis inducing factor mitochondrion associated 1.
    
 0.947
ranbp1
RAN binding protein 1.
 
 
 0.939
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
  0.911
LOC105916632
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
  
 
0.900
ENSFHEP00000005639
Histone H2A; Belongs to the histone H2A family.
    
  0.897
LOC105939372
H2A histone family, member Y; Belongs to the histone H2A family.
    
  0.897
slc25a4
Solute carrier family 25 member 4; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 0.868
ppid
Peptidylprolyl isomerase D.
  
 
0.855
LOC105935774
Histone H2A; Belongs to the histone H2A family.
    
  0.850
ENSFHEP00000028161
Histone H2A; Belongs to the histone H2A family.
    
  0.850
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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