STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105933173Uncharacterized protein. (887 aa)    
Predicted Functional Partners:
fbxo33
F-box protein 33.
      
 0.491
LOC105933159
Calmodulin regulated spectrin-associated protein family, member 2a.
 
  
 
 0.450
ENSFHEP00000022510
CKK domain-containing protein.
 
  
 
 0.438
camsap3
Calmodulin regulated spectrin-associated family protein, member 3.
 
  
 
 0.437
ENSFHEP00000022545
Uncharacterized protein.
    
 
 0.437
camsap1
Calmodulin regulated spectrin-associated protein 1b.
 
  
 
 0.437
LOC105930017
Calmodulin regulated spectrin associated protein 1.
 
  
 
 0.437
ENSFHEP00000033151
CKK domain-containing protein.
    
 
 0.437
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
      
 0.422
WDR63
WD repeat domain 63.
      
 0.420
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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