STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSFHEP00000016817Collagen IV NC1 domain-containing protein. (288 aa)    
Predicted Functional Partners:
LOC105928543
Collagen, type IX, alpha 3.
 
      0.898
ENSFHEP00000025429
Collagen, type IX, alpha 1b.
 
      0.894
LOC105917620
Uncharacterized protein.
 
      0.892
LOC105939055
Complement C1q and tumor necrosis factor-related protein 9B.
 
      0.892
col10a1
Collagen, type X, alpha 1b.
 
      0.886
col8a1
Collagen, type VIII, alpha 1a.
 
      0.852
col9a2
Procollagen, type IX, alpha 2.
 
      0.823
ENSFHEP00000029098
Collagen, type VIII, alpha 2.
 
      0.805
LOC105925362
Collagen, type I, alpha 1a.
 
      0.724
col1a2
Collagen, type I, alpha 2.
 
      0.665
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.