LOC105935359 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105935359

Polypyrimidine tract binding protein 1a. (584 aa)

Predicted Functional Partners:

hnrnpk

0.842

rbm5

0.806

LOC105924860

0.753

LOC105938145

0.753

LOC105924897

0.751

ncbp2

0.734

ENSFHEP00000003962

0.732

HNRNPLL

0.732

LOC105920757

0.732

tra2b

0.694

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000003962	LOC105924860	ENSFHEP00000003962	ENSFHEP00000016270	Uncharacterized protein.	RRM_8 domain-containing protein.	0.900
ENSFHEP00000003962	LOC105924897	ENSFHEP00000003962	ENSFHEP00000015810	Uncharacterized protein.	RRM_8 domain-containing protein.	0.900
ENSFHEP00000003962	LOC105935359	ENSFHEP00000003962	ENSFHEP00000016973	Uncharacterized protein.	Polypyrimidine tract binding protein 1a.	0.732
ENSFHEP00000003962	LOC105938145	ENSFHEP00000003962	ENSFHEP00000020651	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein K, like.	0.777
ENSFHEP00000003962	hnrnpk	ENSFHEP00000003962	ENSFHEP00000020204	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein K.	0.777
ENSFHEP00000003962	ncbp2	ENSFHEP00000003962	ENSFHEP00000001553	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.693
ENSFHEP00000003962	rbm5	ENSFHEP00000003962	ENSFHEP00000030547	Uncharacterized protein.	RNA binding motif protein 5.	0.531
ENSFHEP00000003962	tra2b	ENSFHEP00000003962	ENSFHEP00000007128	Uncharacterized protein.	Transformer 2 beta homolog.	0.667
HNRNPLL	LOC105935359	ENSFHEP00000011600	ENSFHEP00000016973	Heterogeneous nuclear ribonucleoprotein L like.	Polypyrimidine tract binding protein 1a.	0.732
HNRNPLL	LOC105938145	ENSFHEP00000011600	ENSFHEP00000020651	Heterogeneous nuclear ribonucleoprotein L like.	Heterogeneous nuclear ribonucleoprotein K, like.	0.777
HNRNPLL	hnrnpk	ENSFHEP00000011600	ENSFHEP00000020204	Heterogeneous nuclear ribonucleoprotein L like.	Heterogeneous nuclear ribonucleoprotein K.	0.777
HNRNPLL	ncbp2	ENSFHEP00000011600	ENSFHEP00000001553	Heterogeneous nuclear ribonucleoprotein L like.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.693
HNRNPLL	rbm5	ENSFHEP00000011600	ENSFHEP00000030547	Heterogeneous nuclear ribonucleoprotein L like.	RNA binding motif protein 5.	0.531
HNRNPLL	tra2b	ENSFHEP00000011600	ENSFHEP00000007128	Heterogeneous nuclear ribonucleoprotein L like.	Transformer 2 beta homolog.	0.667
LOC105920757	LOC105935359	ENSFHEP00000025060	ENSFHEP00000016973	Heterogeneous nuclear ribonucleoprotein L.	Polypyrimidine tract binding protein 1a.	0.732
LOC105920757	LOC105938145	ENSFHEP00000025060	ENSFHEP00000020651	Heterogeneous nuclear ribonucleoprotein L.	Heterogeneous nuclear ribonucleoprotein K, like.	0.777
LOC105920757	hnrnpk	ENSFHEP00000025060	ENSFHEP00000020204	Heterogeneous nuclear ribonucleoprotein L.	Heterogeneous nuclear ribonucleoprotein K.	0.777
LOC105920757	ncbp2	ENSFHEP00000025060	ENSFHEP00000001553	Heterogeneous nuclear ribonucleoprotein L.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.693
LOC105920757	rbm5	ENSFHEP00000025060	ENSFHEP00000030547	Heterogeneous nuclear ribonucleoprotein L.	RNA binding motif protein 5.	0.531
LOC105920757	tra2b	ENSFHEP00000025060	ENSFHEP00000007128	Heterogeneous nuclear ribonucleoprotein L.	Transformer 2 beta homolog.	0.667