STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105929100Uncharacterized protein. (412 aa)    
Predicted Functional Partners:
LOC105919258
Interleukin-1 receptor-associated kinase 1.
    
 0.864
irak4
Interleukin-1 receptor-associated kinase 4.
    
 0.828
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.802
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.708
ube2n
Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.656
LOC105916653
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.656
LOC105938713
Receptor-interacting serine-threonine kinase 3.
    
  0.640
LOC105919183
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
    
  0.640
LOC105935236-2
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.615
LOC105933722
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.612
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.