STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105922313Death inducer-obliterator 1. (2518 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 
 0.906
rbbp5
Retinoblastoma binding protein 5.
    
 
 0.901
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.893
setd1a
SET domain containing 1A, histone lysine methyltransferase.
   
 
 0.785
setd1b
SET domain containing 1B, histone lysine methyltransferase a.
   
 
 0.785
LOC105927193
WD_REPEATS_REGION domain-containing protein.
    
 
 0.709
wdr82
WD repeat-containing protein 82.
    
 
 0.709
actl6a
Actin-related protein 8; Belongs to the actin family.
    
 
 0.688
rps27a
Ribosomal protein S27a.
    
 
 0.619
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.613
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.