STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSFHEP00000018154Ankyrin repeat domain 34Ba. (490 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 0.576
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.573
ift81
Intraflagellar transport 81 homolog.
    
 0.570
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.547
mars1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.543
traf7
TNF receptor-associated factor 7.
    
 0.538
ift88
Intraflagellar transport 88 homolog.
   
 0.520
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.511
LOC105918616
Fleer.
    
 0.506
birc6
Baculoviral IAP repeat containing 6.
    
 0.506
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.