LOC105939462 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105939462

Hexosyltransferase. (386 aa)

Predicted Functional Partners:

LOC105927257

0.955

LOC105935894

0.955

LOC105919132

0.955

st3gal4

0.954

LOC105919581

0.949

b4galt2

0.945

LOC105920689

0.943

LOC105921714

0.940

st3gal3

0.923

LOC105924322

0.741

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC105919132	LOC105919581	ENSFHEP00000019992	ENSFHEP00000023478	Si:dkey-199f5.8.	Beta-1,4-galactosyltransferase 2.	0.489
LOC105919132	LOC105921714	ENSFHEP00000019992	ENSFHEP00000013266	Si:dkey-199f5.8.	Hexosyltransferase.	0.955
LOC105919132	LOC105924322	ENSFHEP00000019992	ENSFHEP00000002128	Si:dkey-199f5.8.	Hexosyltransferase.	0.748
LOC105919132	LOC105927257	ENSFHEP00000019992	ENSFHEP00000003095	Si:dkey-199f5.8.	Uncharacterized protein.	0.485
LOC105919132	LOC105935894	ENSFHEP00000019992	ENSFHEP00000019044	Si:dkey-199f5.8.	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3.	0.954
LOC105919132	LOC105939462	ENSFHEP00000019992	ENSFHEP00000018384	Si:dkey-199f5.8.	Hexosyltransferase.	0.955
LOC105919132	b4galt2	ENSFHEP00000019992	ENSFHEP00000031644	Si:dkey-199f5.8.	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2.	0.902
LOC105919132	st3gal3	ENSFHEP00000019992	ENSFHEP00000004590	Si:dkey-199f5.8.	ST3 beta-galactoside alpha-2,3-sialyltransferase 3b; Belongs to the glycosyltransferase 29 family.	0.932
LOC105919581	LOC105919132	ENSFHEP00000023478	ENSFHEP00000019992	Beta-1,4-galactosyltransferase 2.	Si:dkey-199f5.8.	0.489
LOC105919581	LOC105920689	ENSFHEP00000023478	ENSFHEP00000025971	Beta-1,4-galactosyltransferase 2.	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	0.902
LOC105919581	LOC105921714	ENSFHEP00000023478	ENSFHEP00000013266	Beta-1,4-galactosyltransferase 2.	Hexosyltransferase.	0.948
LOC105919581	LOC105924322	ENSFHEP00000023478	ENSFHEP00000002128	Beta-1,4-galactosyltransferase 2.	Hexosyltransferase.	0.615
LOC105919581	LOC105927257	ENSFHEP00000023478	ENSFHEP00000003095	Beta-1,4-galactosyltransferase 2.	Uncharacterized protein.	0.900
LOC105919581	LOC105935894	ENSFHEP00000023478	ENSFHEP00000019044	Beta-1,4-galactosyltransferase 2.	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3.	0.482
LOC105919581	LOC105939462	ENSFHEP00000023478	ENSFHEP00000018384	Beta-1,4-galactosyltransferase 2.	Hexosyltransferase.	0.949
LOC105919581	b4galt2	ENSFHEP00000023478	ENSFHEP00000031644	Beta-1,4-galactosyltransferase 2.	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2.	0.920
LOC105919581	st3gal3	ENSFHEP00000023478	ENSFHEP00000004590	Beta-1,4-galactosyltransferase 2.	ST3 beta-galactoside alpha-2,3-sialyltransferase 3b; Belongs to the glycosyltransferase 29 family.	0.932
LOC105920689	LOC105919581	ENSFHEP00000025971	ENSFHEP00000023478	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	Beta-1,4-galactosyltransferase 2.	0.902
LOC105920689	LOC105921714	ENSFHEP00000025971	ENSFHEP00000013266	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	Hexosyltransferase.	0.955
LOC105920689	LOC105924322	ENSFHEP00000025971	ENSFHEP00000002128	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	Hexosyltransferase.	0.748