STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105919728AAA domain-containing protein. (794 aa)    
Predicted Functional Partners:
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.932
phb
Prohibitin.
  
 0.930
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
    
   0.930
ENSFHEP00000011286
Prohibitin.
  
 0.858
ENSFHEP00000016371
Prohibitin.
  
 0.858
mrpl2
Mitochondrial ribosomal protein L2.
  
 
 0.851
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.840
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.833
pmpca
Peptidase (mitochondrial processing) alpha; Belongs to the peptidase M16 family.
  
 0.825
mrpl13
39S ribosomal protein L13, mitochondrial.
  
 
 0.824
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.