STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myf6Myogenic factor 6. (240 aa)    
Predicted Functional Partners:
mef2b
Myocyte enhancer factor 2b.
    
 0.771
ENSFHEP00000009623
BHLH domain-containing protein.
    
 0.765
tcf12
Transcription factor 12.
    
 0.765
LOC105934577
Transcription factor 3a.
    
 0.765
TCF4
Transcription factor 4.
    
 0.765
tcf3
Transcription factor 3b.
    
 0.765
mef2d
Myocyte enhancer factor 2d.
    
 0.752
LOC105935060
MADS-box domain-containing protein.
    
 0.752
myoz1
Uncharacterized protein.
   
  
 0.735
LOC105937089
Myosin, light chain 1, alkali; skeletal, fast.
   
  
 0.712
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.