STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhx2LIM/homeobox protein Lhx2. (417 aa)    
Predicted Functional Partners:
LOC105938673
LIM domain binding 1a.
    
 0.728
ldb1
LIM-domain binding 1b.
    
 0.728
LOC105931932
LIM domain binding 2a.
    
 0.728
LOC105918886
SIX homeobox 3b.
      
 0.635
six3
Homeobox protein six4.1.
      
 0.633
cited1
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.
      
 0.586
ENSFHEP00000019009
LIM domain only 3.
   
 
0.512
LOC105933450
LIM domain only 1.
   
 
0.512
LOC105924010
Uncharacterized protein.
    
 0.501
srf
Serum response factor b.
    
 0.501
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.