LOC105934139 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105934139

Uncharacterized protein. (862 aa)

Predicted Functional Partners:

LOC105920702

0.651

ENSFHEP00000007368

0.651

ENSFHEP00000025972

0.651

GLO1

0.637

LOC105934153

0.635

LOC105919643

0.635

ENSFHEP00000031667

0.548

otud7a

0.524

KCNK4

0.524

klf3

0.519

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000007368	ENSFHEP00000025972	ENSFHEP00000007368	ENSFHEP00000025972	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSFHEP00000007368	ENSFHEP00000031667	ENSFHEP00000007368	ENSFHEP00000031667	Uncharacterized protein.	Zgc:194908.	0.651
ENSFHEP00000007368	LOC105920702	ENSFHEP00000007368	ENSFHEP00000007082	Uncharacterized protein.	Intersectin 2b.	0.986
ENSFHEP00000007368	LOC105934139	ENSFHEP00000007368	ENSFHEP00000021595	Uncharacterized protein.	Uncharacterized protein.	0.651
ENSFHEP00000025972	ENSFHEP00000007368	ENSFHEP00000025972	ENSFHEP00000007368	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSFHEP00000025972	ENSFHEP00000031667	ENSFHEP00000025972	ENSFHEP00000031667	Uncharacterized protein.	Zgc:194908.	0.651
ENSFHEP00000025972	LOC105920702	ENSFHEP00000025972	ENSFHEP00000007082	Uncharacterized protein.	Intersectin 2b.	0.985
ENSFHEP00000025972	LOC105934139	ENSFHEP00000025972	ENSFHEP00000021595	Uncharacterized protein.	Uncharacterized protein.	0.651
ENSFHEP00000031667	ENSFHEP00000007368	ENSFHEP00000031667	ENSFHEP00000007368	Zgc:194908.	Uncharacterized protein.	0.651
ENSFHEP00000031667	ENSFHEP00000025972	ENSFHEP00000031667	ENSFHEP00000025972	Zgc:194908.	Uncharacterized protein.	0.651
ENSFHEP00000031667	LOC105920702	ENSFHEP00000031667	ENSFHEP00000007082	Zgc:194908.	Intersectin 2b.	0.651
ENSFHEP00000031667	LOC105934139	ENSFHEP00000031667	ENSFHEP00000021595	Zgc:194908.	Uncharacterized protein.	0.548
GLO1	LOC105919643	ENSFHEP00000021581	ENSFHEP00000022018	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	Solute carrier organic anion transporter family member.	0.513
GLO1	LOC105934139	ENSFHEP00000021581	ENSFHEP00000021595	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	Uncharacterized protein.	0.637
GLO1	LOC105934153	ENSFHEP00000021581	ENSFHEP00000000695	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	Solute carrier organic anion transporter family member.	0.513
KCNK4	LOC105934139	ENSFHEP00000004727	ENSFHEP00000021595	Potassium two pore domain channel subfamily K member 4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein.	0.524
KCNK4	klf3	ENSFHEP00000004727	ENSFHEP00000007979	Potassium two pore domain channel subfamily K member 4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Kruppel like factor 3.	0.531
KCNK4	otud7a	ENSFHEP00000004727	ENSFHEP00000001230	Potassium two pore domain channel subfamily K member 4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	OTU deubiquitinase 7A.	0.516
LOC105919643	GLO1	ENSFHEP00000022018	ENSFHEP00000021581	Solute carrier organic anion transporter family member.	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	0.513
LOC105919643	LOC105934139	ENSFHEP00000022018	ENSFHEP00000021595	Solute carrier organic anion transporter family member.	Uncharacterized protein.	0.635