STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105917293Keratin 98; Belongs to the intermediate filament family. (383 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.844
LOC105936151
RAN binding protein 2.
   
 0.645
rbbp5
Retinoblastoma binding protein 5.
    
 0.587
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.584
RIMS2
Regulating synaptic membrane exocytosis 2.
   
  0.568
LOC105940360
Lysine (K)-specific demethylase 6B, a.
   
 0.568
LOC105937758
Uncharacterized protein.
   
  0.568
ENSFHEP00000000334
Uncharacterized protein.
    
  0.556
ENSFHEP00000020981
TROVE domain-containing protein.
    
 0.553
kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.545
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.