STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSFHEP00000021917Uncharacterized protein. (875 aa)    
Predicted Functional Partners:
ENSFHEP00000001215
Uncharacterized protein.
 
     0.943
KCMF1
Potassium channel modulatory factor 1.
    
 
 0.701
ENSFHEP00000020723
Potassium channel modulatory factor 1.
    
 
 0.701
atg7
Ubiquitin modifier-activating enzyme ATG7-like protein.
     
 0.581
uba5
Ubiquitin-like modifier activating enzyme 5.
     
 0.581
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
   
 
 0.574
emc1
ER membrane protein complex subunit 1.
 
    
 0.547
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.536
LOC105926048
Ubiquitin-like modifier activating enzyme 3.
     
 0.527
UBA3
Ubiquitin like modifier activating enzyme 3.
     
 0.527
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.