STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105935730Si:ch211-37e10.2. (806 aa)    
Predicted Functional Partners:
fjx1
Four-jointed box protein 1.
   
 0.767
lix1
Limb and CNS expressed 1.
   
 0.724
LOC105923290
FERM_C domain-containing protein.
    
 0.561
frmd6
FERM domain containing 6.
    
 0.561
LOC105933278
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.552
ENSFHEP00000024196
Uncharacterized protein.
    
 0.552
rere
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.552
LOC105931606
Atrophin 1.
    
 0.552
aph1a
APH1B gamma secretase subunit.
     
 0.485
csnk1d
Casein kinase 1, delta b; Belongs to the protein kinase superfamily.
    
  0.466
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.