STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105939783Uncharacterized protein. (209 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.649
tent4b
Non-canonical poly(A) RNA polymerase PAPD5.
   
 
 0.508
tent4a
Terminal nucleotidyltransferase 4A.
   
 
 0.508
LOC105927738
Uncharacterized protein.
   
 
 0.508
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.456
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.402
ipo8
Importin 8.
   
 
 0.401
ipo7
Importin 7.
   
 
 0.401
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.