STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105917913Rho guanine nucleotide exchange factor (GEF) 40. (1479 aa)    
Predicted Functional Partners:
LOC105920650
Zinc finger protein 219.
 
   
 0.605
plekhg7
Pleckstrin homology domain containing, family G (with RhoGef domain) member 7.
     
 0.547
arhgef38
Rho guanine nucleotide exchange factor (GEF) 38.
     
 0.545
LOC105920649
Bloodthirsty-related gene family, member 12.
   
  
 0.518
LOC105922596
Tantalus domain-containing protein.
  
 
   0.513
LOC105934367
G-protein coupled receptor 132, putative; Belongs to the G-protein coupled receptor 1 family.
  
  
  0.405
LOC105928369
Rho guanine nucleotide exchange factor 28.
  
  
 0.405
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.