STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTP4A3Protein tyrosine phosphatase type IVA 3. (170 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.739
LOC105915611
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.518
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.518
cnnm3
Uncharacterized protein.
    
 
 0.518
CNNM1-2
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.518
LOC105938174
Uncharacterized protein.
    
 
 0.518
cnnm2
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.518
C11orf96
AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.
      
 0.514
tomm20
Translocase of outer mitochondrial membrane 20b.
      
 0.511
LOC105919379
Protein kinase domain-containing protein.
     
 0.500
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.