STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEMA4DSemaphorin 4D; Belongs to the semaphorin family. (871 aa)    
Predicted Functional Partners:
LOC105922372
Plexin B3.
    
 0.861
LOC105933706
Plexin b1b.
    
 0.861
LOC105934241
Plexin b1a.
    
0.774
LOC105927402
Plexin b2b.
    
 0.757
LOC105937131
Sema domain-containing protein.
    
 0.757
ptprc
Uncharacterized protein.
    
 0.736
mst1r
Macrophage-stimulating protein receptor.
    
 0.728
LOC105933677
Macrophage stimulating 1 receptor a.
    
 0.728
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.728
ENSFHEP00000016574
Plexin_cytopl domain-containing protein.
    
 0.689
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.