STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
obi1ORC ubiquitin ligase 1. (657 aa)    
Predicted Functional Partners:
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 
 0.591
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 
 0.581
orc3
Origin recognition complex, subunit 3.
   
 
 0.574
orc5
Origin recognition complex, subunit 5.
    
 
 0.526
scel
LIM zinc-binding domain-containing protein.
      
 0.513
ENSFHEP00000028581
WD repeat containing, antisense to TP73.
    
   0.430
cnot1
CCR4-NOT transcription complex, subunit 1.
    
   0.430
TCEANC
Transcription elongation factor A N-terminal and central domain containing.
    
   0.428
LOC105934107
CCR4-NOT transcription complex, subunit 3b.
    
   0.400
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
   0.400
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.