STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRSF3Serine and arginine rich splicing factor 3b. (165 aa)    
Predicted Functional Partners:
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.982
ENSFHEP00000004611
Eukaryotic translation initiation factor 4A3.
   
 0.978
nxf1
Zgc:153681.
    
 0.978
srsf2
Serine and arginine rich splicing factor 2a.
   
0.977
LOC105931728
SRSF protein kinase 1b.
    
 0.959
ENSFHEP00000006064
Serine and arginine rich splicing factor 7a.
  
0.956
srsf7
Serine and arginine rich splicing factor 7b.
  
0.956
LOC105915951
Mago homolog, exon junction complex subunit.
   
 0.949
tra2b
Transformer 2 beta homolog.
   
 0.941
tra2a
Transformer 2 beta homolog.
   
 0.941
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.