STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105938512Uncharacterized protein. (240 aa)    
Predicted Functional Partners:
TPM1
Tropomyosin 1 (alpha); Belongs to the tropomyosin family.
   
 0.966
LOC105917113
Tropomyosin alpha-3 chain; Belongs to the tropomyosin family.
   
 0.959
ENSFHEP00000011004
Uncharacterized protein.
   
 0.959
LOC105938382
Actin alpha cardiac muscle 1a.
   
 0.959
TNNC1
Troponin C type 1a (slow).
   
 0.958
LOC105920093
Troponin C type 1b (slow).
   
 0.958
LOC105928077
Troponin T type 2b (cardiac).
  
 
 
0.935
ACTA1
Actin alpha 1, skeletal muscle.
   
 0.928
tnni1
Troponin I type 1a (skeletal, slow).
 
 0.915
LOC105928078
Troponin I type 1b (skeletal, slow).
 
 0.913
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.