STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105937183Matrix metallopeptidase 17b. (654 aa)    
Predicted Functional Partners:
LOC105936202
TIMP metallopeptidase inhibitor 2b.
    
 0.727
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.727
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.670
LOC105928246
Heparin-binding EGF-like growth factor a.
    
 0.580
MUSK
Muscle associated receptor tyrosine kinase.
    
 0.577
TIMP4
TIMP metallopeptidase inhibitor 4.
    
 0.574
LOC105931506
Protocadherin 10a.
     
 0.560
LOC105920122
Protocadherin 10b.
     
 0.553
LOC105919592
Matrix metallopeptidase 20a (enamelysin).
  
0.528
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.514
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.