STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105935582DENN/MADD domain containing 5B. (1271 aa)    
Predicted Functional Partners:
RAB41
RAB41, member RAS oncogene family.
    
 
 0.503
LOC105937589
RAB6B, member RAS oncogene family.
    
 
 0.503
rab6a
Uncharacterized protein.
    
 
 0.503
LOC105925402
RAB6B, member RAS oncogene family a.
    
 
 0.503
RAB28
RAB28, member RAS oncogene family.
     
 0.470
LOC105917879
RAB34, member RAS oncogene family b.
    
 
 0.448
LOC105933865
RAB36, member RAS oncogene family.
    
 
 0.448
rab34
RAB34, member RAS oncogene family a.
    
 
 0.448
itfg1
Integrin alpha FG-GAP repeat containing 1.
      
 0.428
avl9
AVL9 homolog (S. cerevisiase).
      
 0.422
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.