STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc4a1apSolute carrier family 4 member 1 adaptor protein. (749 aa)    
Predicted Functional Partners:
osgep
Probable tRNA N6-adenosine threonylcarbamoyltransferase; Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity.
      
 0.607
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
   0.568
prpf38a
Pre-mRNA processing factor 38A.
   
  
 0.470
pin1
Peptidyl-prolyl cis-trans isomerase.
      
 0.436
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
   0.433
zc3h14
Zinc finger CCCH-type containing 14.
   
  
 0.432
slu7
SLU7 homolog, splicing factor.
   
    0.431
nol7
Nucleolar protein 7.
      
 0.429
dnajc8
DnaJ (Hsp40) homolog, subfamily C, member 8.
    
   0.428
snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
   0.424
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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