STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105925394Homeobox domain-containing protein. (437 aa)    
Predicted Functional Partners:
ENSFHEP00000005422
Folliculogenesis specific bHLH transcription factor.
   
 0.562
gcna
Germ cell nuclear acidic peptidase.
   
  
 0.523
LOC105924010
Uncharacterized protein.
    
 0.501
srf
Serum response factor b.
    
 0.501
LOC105938673
LIM domain binding 1a.
    
 0.453
ldb1
LIM-domain binding 1b.
    
 0.453
LOC105931932
LIM domain binding 2a.
    
 0.453
cplx3
Complexin 3b.
     
 0.449
tpk1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
    
  0.430
ENSFHEP00000008396
F-box domain-containing protein.
   
  
 0.419
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.