STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105927076Troponin T type 3a (skeletal, fast). (263 aa)    
Predicted Functional Partners:
tnni1
Troponin I type 1a (skeletal, slow).
 
 0.942
TNNI2-3
Troponin I type 2b (skeletal, fast), tandem duplicate 1.
 
 
 0.922
TNNI2
Troponin I2, fast skeletal type.
   
 0.920
TNNI2-2
Troponin I2, fast skeletal type.
   
 0.920
LOC105928078
Troponin I type 1b (skeletal, slow).
 
 0.908
LOC105937089
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.902
LOC105937849
Si:rp71-17i16.4.
   
 0.889
LOC105938517
Troponin I4b, tandem duplicate 2.
 
 0.883
LOC105938515
Uncharacterized protein.
 
 0.883
ENSFHEP00000016047
Uncharacterized protein.
  
 0.880
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.