STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdm13PR domain containing 13. (622 aa)    
Predicted Functional Partners:
ptf1a
Pancreas transcription factor 1 subunit alpha.
   
 
 0.543
arl15
ADP-ribosylation factor-like 15a.
    
 0.536
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
   
 
  0.532
pole
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
     
 0.531
ENSFHEP00000000334
Uncharacterized protein.
    
  0.511
LOC105922837
BRCT domain-containing protein.
    
  0.479
LOC105940360
Lysine (K)-specific demethylase 6B, a.
   
 0.457
LOC105932189
Lysine (K)-specific demethylase 6B, b.
   
 0.443
YTHDC2
YTH domain containing 2.
    
  0.441
slc38a7
Solute carrier family 38 member 7.
    
 0.437
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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