STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctcfCCCTC-binding factor (zinc finger protein). (755 aa)    
Predicted Functional Partners:
rad21
RAD21 cohesin complex component a.
   
 0.873
LOC105931684
RAD21 cohesin complex component b.
   
 0.749
LOC105935255
RAD21 cohesin complex component like 1.
   
 0.749
smc3
Structural maintenance of chromosomes 3.
   
 
 0.716
zbtb33
Zinc finger and BTB domain containing 33.
    
 
0.691
LOC105930854
E1A binding protein p300 a.
   
 0.642
ep300
E1A binding protein p300 b.
   
 0.642
maml1
Mastermind-like transcriptional coactivator 1.
    
 
 0.623
maml2
Mastermind 2-like protein.
    
 
 0.623
LOC105929386
Stromal antigen 2a.
   
 
 0.610
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.