STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zfand2aZinc finger, AN1-type domain 2A. (338 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 
 0.826
rps27a
Ribosomal protein S27a.
    
 
 0.817
katnal2
Katanin p60 ATPase-containing subunit A 2-like protein.
   
 
 0.596
psmd6
Proteasome 26S subunit, non-ATPase 6.
   
 
 0.593
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.585
LOC105929216
Spermatogenesis-associated 5 protein 1-like protein; Belongs to the AAA ATPase family.
    
 
 0.585
SPATA5
Spermatogenesis associated 5.
    
 
 0.585
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.585
fam214a
Family with sequence similarity 214 member A.
      
 0.584
psmc6
Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.
    
   0.565
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.