STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105926367Chromobox homolog 3b. (227 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.673
rnf2
Ring finger protein 2.
    
 0.673
tfdp1
Transcription factor.
   
 0.614
chaf1a
Chromatin assembly factor 1, subunit A (p150).
    
 
 0.583
emsy
EMSY transcriptional repressor, BRCA2 interacting.
    
 
 0.571
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 0.556
ENSFHEP00000034658
Histone H2A; Belongs to the histone H2A family.
   
 0.556
LOC105930101
Histone H3; Belongs to the histone H3 family.
    
 0.551
ENSFHEP00000005886
Histone H3; Belongs to the histone H3 family.
    
 0.551
ENSFHEP00000006008
Uncharacterized protein.
    
 0.551
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.