ENSFHEP00000030612 protein (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSFHEP00000030612

Ig-like domain-containing protein. (120 aa)

Predicted Functional Partners:

ENSFHEP00000008560

0.573

uba52

0.558

LOC105938939

0.538

ENSFHEP00000009010

0.515

LOC105937894

0.507

cd79a

0.505

LOC105936529

0.497

plat

0.489

LOC105936728

0.489

LOC105926476

0.489

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000008560	ENSFHEP00000030612	ENSFHEP00000008560	ENSFHEP00000030612	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.573
ENSFHEP00000009010	ENSFHEP00000030612	ENSFHEP00000009010	ENSFHEP00000030612	Uncharacterized protein.	Ig-like domain-containing protein.	0.515
ENSFHEP00000030612	ENSFHEP00000008560	ENSFHEP00000030612	ENSFHEP00000008560	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.573
ENSFHEP00000030612	ENSFHEP00000009010	ENSFHEP00000030612	ENSFHEP00000009010	Ig-like domain-containing protein.	Uncharacterized protein.	0.515
ENSFHEP00000030612	LOC105926476	ENSFHEP00000030612	ENSFHEP00000027223	Ig-like domain-containing protein.	Uncharacterized protein.	0.489
ENSFHEP00000030612	LOC105936529	ENSFHEP00000030612	ENSFHEP00000007930	Ig-like domain-containing protein.	MCL1 apoptosis regulator, BCL2 family member b.	0.497
ENSFHEP00000030612	LOC105936728	ENSFHEP00000030612	ENSFHEP00000006669	Ig-like domain-containing protein.	Plasminogen activator, urokinase a; Belongs to the peptidase S1 family.	0.489
ENSFHEP00000030612	LOC105937894	ENSFHEP00000030612	ENSFHEP00000009931	Ig-like domain-containing protein.	B-cell antigen receptor complex-associated protein beta chain.	0.507
ENSFHEP00000030612	LOC105938939	ENSFHEP00000030612	ENSFHEP00000012229	Ig-like domain-containing protein.	Tissue factor pathway inhibitor.	0.538
ENSFHEP00000030612	cd79a	ENSFHEP00000030612	ENSFHEP00000005847	Ig-like domain-containing protein.	CD79a molecule, immunoglobulin-associated alpha.	0.505
ENSFHEP00000030612	plat	ENSFHEP00000030612	ENSFHEP00000006298	Ig-like domain-containing protein.	Plasminogen activator; Belongs to the peptidase S1 family.	0.489
ENSFHEP00000030612	uba52	ENSFHEP00000030612	ENSFHEP00000030704	Ig-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.558
LOC105926476	ENSFHEP00000030612	ENSFHEP00000027223	ENSFHEP00000030612	Uncharacterized protein.	Ig-like domain-containing protein.	0.489
LOC105926476	LOC105938939	ENSFHEP00000027223	ENSFHEP00000012229	Uncharacterized protein.	Tissue factor pathway inhibitor.	0.666
LOC105936529	ENSFHEP00000030612	ENSFHEP00000007930	ENSFHEP00000030612	MCL1 apoptosis regulator, BCL2 family member b.	Ig-like domain-containing protein.	0.497
LOC105936728	ENSFHEP00000030612	ENSFHEP00000006669	ENSFHEP00000030612	Plasminogen activator, urokinase a; Belongs to the peptidase S1 family.	Ig-like domain-containing protein.	0.489
LOC105936728	LOC105938939	ENSFHEP00000006669	ENSFHEP00000012229	Plasminogen activator, urokinase a; Belongs to the peptidase S1 family.	Tissue factor pathway inhibitor.	0.666
LOC105937894	ENSFHEP00000030612	ENSFHEP00000009931	ENSFHEP00000030612	B-cell antigen receptor complex-associated protein beta chain.	Ig-like domain-containing protein.	0.507
LOC105937894	cd79a	ENSFHEP00000009931	ENSFHEP00000005847	B-cell antigen receptor complex-associated protein beta chain.	CD79a molecule, immunoglobulin-associated alpha.	0.999
LOC105938939	ENSFHEP00000030612	ENSFHEP00000012229	ENSFHEP00000030612	Tissue factor pathway inhibitor.	Ig-like domain-containing protein.	0.538