STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssna1Sjoegren syndrome nuclear autoantigen 1. (114 aa)    
Predicted Functional Partners:
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
      
 0.637
anapc2
Anaphase promoting complex subunit 2; Belongs to the cullin family.
      
 0.637
spast
Spastin; Belongs to the AAA ATPase family.
      
 0.637
ppp2r5a
Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.
      
 0.637
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
   
   0.616
haus7
Uncharacterized protein.
     
 0.584
rbm42
RNA binding motif protein 42.
   
 
  0.535
nup43
Nucleoporin 43.
      
 0.529
ENSFHEP00000004424
Uncharacterized protein.
   
 
  0.516
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
      
 0.491
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.