STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105917320Epididymal secretory protein E1. (149 aa)    
Predicted Functional Partners:
npc1
Niemann-Pick disease, type C1.
    
 0.987
NPC1L1
NPC1 like intracellular cholesterol transporter 1.
    
 0.954
scap
SREBF chaperone.
    
 0.874
ENSFHEP00000019727
Vitellogenin domain-containing protein.
     
 0.590
apob
Apolipoprotein Ba.
     
 0.590
LOC105930714
Apolipoprotein Bb, tandem duplicate 2.
     
 0.590
ENSFHEP00000034095
Uncharacterized protein.
     
 0.590
LOC105928653
Vitellogenin 3, phosvitinless.
     
 0.567
LOC105928644
Lipovitellin-1; Precursor of the egg-yolk proteins that are sources of nutrients during early development of oviparous organisms.
     
 0.567
LOC105921725
Lipovitellin-1; Precursor of the major egg-yolk proteins that are sources of nutrients during early development of oviparous organisms.
     
 0.534
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.