STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105925226HMG box domain-containing protein. (239 aa)    
Predicted Functional Partners:
LOC105932118
POU domain protein.
    
 0.716
LOC105937542
Uncharacterized protein.
    
 0.612
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.612
LOC105917287
Junction plakoglobin a.
    
 0.612
ube2i
Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.489
LOC105916074
SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.489
LOC105919322
HMG box domain-containing protein.
    
0.456
tcf7
Transcription factor 7.
    
 0.456
LOC105926854
Transcription factor 7 like 1b.
    
0.456
lef1
Lymphoid enhancer-binding factor 1.
    
 0.456
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.