STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105934489Contactin 3b. (935 aa)    
Predicted Functional Partners:
LOC105928614
Uncharacterized protein.
    
0.706
chl1
Cell adhesion molecule L1-like b.
  
 
0.673
LOC105933233
Carbonic anhydrase XVI b.
    
 
 0.662
NRCAM
Neuronal cell adhesion molecule.
    
0.655
LOC105933774
Uncharacterized protein.
    
0.655
l1cam
L1 cell adhesion molecule, paralog a.
    
0.655
LOC105937515
Neuronal cell adhesion molecule a.
    
0.655
nfasc
Uncharacterized protein.
    
0.655
LOC105934899
Amyloid beta (A4) precursor protein b.
   
 
 0.594
APP
Amyloid beta precursor protein.
   
 
 0.594
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.