STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105928543Collagen, type IX, alpha 3. (599 aa)    
Predicted Functional Partners:
cd44
Link domain-containing protein.
    
  0.931
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
  0.924
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.905
LOC105930938
Integrin beta; Belongs to the integrin beta chain family.
    
 0.904
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.904
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.904
LOC105935232
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
    
 0.901
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.901
ENSFHEP00000009041
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
     
 0.900
itga2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
     
 0.899
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.