STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105926851Transient receptor potential cation channel, subfamily M, member 3. (1694 aa)    
Predicted Functional Partners:
nudt9
Nudix (nucleoside diphosphate linked moiety X)-type motif 9.
 
   
 0.755
LOC105932774
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.524
LOC105916101
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.524
LOC105925621
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.524
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.524
LOC105925566
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.524
gnb4
Guanine nucleotide binding protein (G protein), beta polypeptide 4b.
    
 
 0.475
gnb1
Guanine nucleotide binding protein (G protein), beta polypeptide 1a.
    
 
 0.475
LOC105933678
Guanine nucleotide binding protein (G protein), beta polypeptide 1b.
    
 
 0.475
LOC105929361
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
    
 
 0.475
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.