STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105922446Inhibitor of DNA binding 1, HLH protein. (127 aa)    
Predicted Functional Partners:
LOC105927694
Inhibitor of DNA binding 3.
   
0.972
id4
Inhibitor of DNA binding 4.
  
  
0.964
id2
Inhibitor of DNA binding 2a.
  
  
0.823
tcf12
Transcription factor 12.
    
 
 0.792
LOC105934577
Transcription factor 3a.
    
 
 0.792
TCF4
Transcription factor 4.
    
 
 0.792
tcf3
Transcription factor 3b.
    
 
 0.792
thbs2
Thrombospondin 2a.
    
 0.753
LOC105936335
Thrombospondin 1b.
    
 0.753
LOC105938393
Thrombospondin 1a.
    
 0.753
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.